C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin, light chain 4, alkali; atrial, embryonic
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000572316 MYL4-002 ENSG00000198336 9606 + 17:47209035-47223658 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonKidneyLungMusclePlacentaTestisENST00000572316
Transcript ID Adipose Adrenal Colon Kidney Lung Muscle Placenta Testis
ENST00000572316 0.863±0.00 0.686±0.00 0.670±0.00 0.316±0.00 5.815±0.00 1.408±0.00 4.121±0.00 2.742±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HD CIL_0008HD_0001 VISTA 17:46991162-47592148
CIL_0002QR CIL_0002QR_0001 CGP 17:47117703-47223679
CIL_0004WN CIL_0004WN_0001 CGP 17:47200446-47311816

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002026 IMP regulation of the force of heart contraction
GO:0003785 IDA actin monomer binding
GO:0005509 IEA calcium ion binding
GO:0005829 TAS cytosol
GO:0016459 IEA myosin complex
GO:0030049 TAS muscle filament sliding
GO:0031672 IMP A band
GO:0032038 NAS myosin II heavy chain binding
GO:0032781 IMP positive regulation of ATPase activity
GO:0051015 IMP actin filament binding
GO:0060048 IMP cardiac muscle contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106956 Myl4-004 protein_coding Mus_musculus 0 686
ENSMUST00000106957 Myl4-003 protein_coding Mus_musculus 0 686
ENSMUST00000018800 Myl4-001 protein_coding Mus_musculus 0 686
ENSMUST00000153761 Myl4-007 protein_coding Mus_musculus 0 665
ENSMUST00000123074 Myl4-006 retained_intron Mus_musculus 0 608
ENSMUST00000130588 Myl4-005 nonsense_mediated_decay Mus_musculus 0 512
ENSMUST00000155271 Myl4-002 retained_intron Mus_musculus 0 372
ENSMUST00000116136 Gm5915-001 processed_pseudogene Mus_musculus 0 257
ENSMUST00000153604 Gm5526-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000164181 Myl6-201 protein_coding Mus_musculus 0 252
ENSMUST00000075585 Gm10080-201 pseudogene Mus_musculus 0 248
ENSMUST00000121022 Gm11836-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000136244 Myl4-008 protein_coding Mus_musculus 4e-26 122

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