C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: enhancer of mRNA decapping 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000573992 EDC4-004 ENSG00000038358 9606 + 16:67877489-67884497 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENST00000573992
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000573992 2.441±0.00 5.305±0.00 1.344±0.00 2.771±0.00 2.216±0.27 0.968±0.53 1.418±0.06 6.218±0.00 6.051±1.52 3.188±0.72 6.923±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007FS CIL_0007FS_0001 CGP 16:67846732-67884503
CIL_0007FU CIL_0007FU_0001 CGP 16:67873023-67888855

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040254 Edc4-001 protein_coding Mus_musculus 0 4431
ENSMUST00000119261 Edc4-002 protein_coding Mus_musculus 0 2281
ENSMUST00000136048 Edc4-003 nonsense_mediated_decay Mus_musculus 0 2032
ENSMUST00000132680 Edc4-006 protein_coding Mus_musculus 0 1362
ENSMUST00000145618 Edc4-005 protein_coding Mus_musculus 0 894
ENSMUST00000156357 Edc4-007 retained_intron Mus_musculus 0 704
ENSMUST00000139154 Edc4-004 retained_intron Mus_musculus 0 623
ENSDART00000089787 edc4-201 protein_coding Danio_rerio 0 350
ENSDART00000132381 edc4-001 protein_coding Danio_rerio 0 350

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