C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | nucleoporin 88kDa | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000574087  |
NUP88-011 |
ENSG00000108559 |
9606 | - |
17:5386687-5387912  |
retained_intron |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00020X | CIL_00020X_0001 | CGP | 17:5208961-5385812 |
| CIL_00060J | CIL_00060J_0002 | CGP | 17:5282265-5420160 |
| CIL_00045W | CIL_00045W_0001 | CGP | 17:5360963-5432876 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000108531
|
Nup88-001 | protein_coding | Mus_musculus | 0 | 678 |
|
ENSMUST00000141179
|
Nup88-009 | retained_intron | Mus_musculus | 0 | 676 |
|
ENSMUST00000108530
|
Nup88-002 | protein_coding | Mus_musculus | 0 | 676 |
|
ENSMUST00000035283
|
Nup88-003 | protein_coding | Mus_musculus | 0 | 601 |
|
ENSMUST00000178253
|
Nup88-014 | nonsense_mediated_decay | Mus_musculus | 0 | 518 |
|
ENSMUST00000123917
|
Nup88-010 | retained_intron | Mus_musculus | 0 | 224 |
|
ENSMUST00000123192
|
Nup88-006 | retained_intron | Mus_musculus | 4e-39 | 165 |
|
ENSMUST00000148168
|
Nup88-004 | retained_intron | Mus_musculus | 4e-39 | 165 |
