C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000574799 CCDC40-004 ENSG00000141519 9606 + 17:80048370-80100604 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartLiverLungOvaryPlacentaTestisENST00000574799
Transcript ID Breast Heart Liver Lung Ovary Placenta Testis
ENST00000574799 0.880±0.00 0.154±0.00 0.120±0.04 0.190±0.00 1.300±0.97 0.083±0.00 5.966±4.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000040 CIL_000040_0001 CGP 17:79932343-80100613
CIL_00003V CIL_00003V_0001 CGP 17:80036632-80119879

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035935 Ccdc40-001 protein_coding Mus_musculus 0 1620
ENSMUST00000053440 Ccdc40-002 protein_coding Mus_musculus 0 1495
ENSMUST00000133788 Ccdc40-005 retained_intron Mus_musculus 0 403
ENSMUST00000126652 Ccdc40-003 processed_transcript Mus_musculus 0 263
ENSMUST00000155683 Ccdc40-006 retained_intron Mus_musculus 1.00053e-42 180

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