C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000575692 HNRNPA1P16-001 ENSG00000262333 9606 + 17:2306761-2307715 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093G CIL_00093G_0001 VISTA 17:1876478-2477942
CIL_0007RP CIL_0007RP_0001 VISTA 17:1878704-2480995

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1190
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1190
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 1142
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 1101
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 1075
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 1066
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 972
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 913
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 913
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 891
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 880
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 813
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 712
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 0 675
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 640
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000189260 RP23-389M9.4-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000183590 Gm5269-002 protein_coding Mus_musculus 3e-33 147

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