C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000576562 HOXB8-002 ENSG00000120068 9606 - 17:48613188-48614704 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverOvaryPlacentaENST00000576562
Transcript ID Kidney Liver Ovary Placenta
ENST00000576562 7.273±0.00 0.266±0.00 1.347±1.34 0.224±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168043 Hoxb8-201 protein_coding Mus_musculus 0 1158
ENSMUST00000052650 Hoxb8-001 protein_coding Mus_musculus 0 1158
ENSMUST00000125410 Hoxb8-002 protein_coding Mus_musculus 0 944
ENSMUST00000000704 Hoxb6-201 protein_coding Mus_musculus 5e-35 152
ENSMUST00000173432 Hoxb6-001 protein_coding Mus_musculus 5e-35 152
ENSMUST00000053932 HOXD3-001 nonsense_mediated_decay Mus_musculus 0.00000000000006 82
ENSMUST00000047904 Hoxd4-201 protein_coding Mus_musculus 0.00000000000006 82
ENSMUST00000111980 Hoxd4-001 protein_coding Mus_musculus 0.00000000000006 82
ENSMUST00000144040 Hoxd4-002 processed_transcript Mus_musculus 0.00000000000006 82
ENSMUST00000057054 Meox1-001 protein_coding Mus_musculus 0.00000000004 73

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