C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G protein pathway suppressor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000578552 GPS1-001 ENSG00000169727 9606 + 17:82051865-82057470 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000578552
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000578552 18.862±0.00 14.746±0.00 6.532±3.79 28.137±0.00 10.948±0.00 7.904±6.03 36.639±0.00 13.580±10.37 14.180±0.00 32.663±25.12 21.264±8.79 23.552±9.51 35.839±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043X CIL_00043X_0002 CGP 17:82035136-82051831
CIL_0004VP CIL_0004VP_0001 CGP 17:82047902-82057470
CIL_0004VJ CIL_0004VJ_0001 CGP 17:82050691-82065887

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000188 TAS inactivation of MAPK activity
GO:0005095 TAS GTPase inhibitor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0007049 TAS cell cycle
GO:0007254 TAS JNK cascade
GO:0008180 IDA COP9 signalosome
GO:0010388 IDA cullin deneddylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116305 Gps1-007 protein_coding Mus_musculus 0 1724
ENSMUST00000172809 Gps1-002 protein_coding Mus_musculus 0 1661
ENSMUST00000153678 Gps1-006 nonsense_mediated_decay Mus_musculus 0 1661
ENSMUST00000100134 Gps1-001 protein_coding Mus_musculus 0 1639
ENSMUST00000122292 Gm9816-001 processed_pseudogene Mus_musculus 0 1620
ENSMUST00000156723 Gps1-005 retained_intron Mus_musculus 0 507
ENSMUST00000132422 Gps1-003 retained_intron Mus_musculus 0 355
ENSMUST00000144519 Gps1-004 retained_intron Mus_musculus 0 289

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