C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin B pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000578713 UBBP4-004 ENSG00000263563 9606 + 17:22204089-22205136 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000578713
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000578713 17.738±0.00 32.110±0.00 3.792±0.00 52.983±32.83 15.171±9.03 23.659±18.38 13.520±8.83 30.218±14.92 22.327±17.42 22.792±14.86 13.830±4.65 32.755±22.84 36.738±12.23 130.444±17.44

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019649 Ubb-001 protein_coding Mus_musculus 0 1029
ENSMUST00000111388 Gm1821-001 processed_pseudogene Mus_musculus 0 887
ENSMUST00000136938 Ubb-002 protein_coding Mus_musculus 0 878
ENSMUST00000156249 Ubc-002 protein_coding Mus_musculus 0 782
ENSMUST00000136312 Ubc-001 protein_coding Mus_musculus 0 782
ENSMUST00000108707 Ubc-003 protein_coding Mus_musculus 0 676
ENSDART00000099105 ubc-001 protein_coding Danio_rerio 0 577
ENSMUST00000122457 Gm8648-001 processed_pseudogene Mus_musculus 0 291

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