C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000579248 RPL17-018 ENSG00000265681 9606 - 18:49488484-49492444 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverLungPlacentaTestisENST00000579248
Transcript ID Breast Kidney Liver Lung Placenta Testis
ENST00000579248 76.354±0.00 128.217±0.00 92.621±0.00 287.146±0.00 91.464±3.89 99.117±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015934 IEA large ribosomal subunit
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 754
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 754
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 732
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 715
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 710
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 704
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 704
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 688
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000146593 Gm15843-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 586
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000120830 Gm13665-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000139696 Gm8062-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000187749 RP23-305F24.2-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 477
ENSMUST00000121672 Gm11363-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000117144 Gm6429-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000162128 Gm16111-001 processed_pseudogene Mus_musculus 0 350

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