C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, subfamily H (eag-related), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000581784 KCNH6-002 ENSG00000173826 9606 + 17:63523334-63548977 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000581784
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000581784 0.087±0.00 0.195±0.00 0.119±0.00 0.148±0.00 0.075±0.00 0.104±0.00 0.047±0.00 0.026±0.00 0.379±0.00 0.012±0.00 0.108±0.00 0.164±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0001 VISTA 17:63374232-63977730
CIL_0006ZT CIL_0006ZT_0001 CGP 17:63523334-63594266

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IEA signal transducer activity
GO:0005216 IEA ion channel activity
GO:0005249 IBA voltage-gated potassium channel activity
GO:0005886 TAS plasma membrane
GO:0005887 IBA integral component of plasma membrane
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006811 IEA ion transport
GO:0007165 IEA signal transduction
GO:0007268 TAS synaptic transmission
GO:0016020 IEA membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0042391 IBA regulation of membrane potential
GO:0055085 IEA transmembrane transport
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106903 Kcnh6-002 protein_coding Mus_musculus 0 3101
ENSMUST00000001965 Kcnh6-001 protein_coding Mus_musculus 0 1570
ENSMUST00000145539 Kcnh6-004 nonsense_mediated_decay Mus_musculus 0 1561
ENSMUST00000140695 Kcnh6-003 processed_transcript Mus_musculus 0 734
ENSMUST00000115098 Kcnh2-002 protein_coding Mus_musculus 0 662
ENSMUST00000036092 Kcnh2-001 protein_coding Mus_musculus 0 662
ENSDART00000024058 kcnh2a-001 protein_coding Danio_rerio 0 435
ENSDART00000084238 KCNH7 (4 of 6)-201 protein_coding Danio_rerio 0 359
ENSMUST00000126791 Kcnh2-003 processed_transcript Mus_musculus 0 342
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000004 58

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