C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000582436 PHF12-005 ENSG00000109118 9606 - 17:28909570-28950954 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLungENST00000582436
Transcript ID Brain Breast Colon Lung
ENST00000582436 0.441±0.00 0.762±0.00 0.639±0.00 0.413±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WH CIL_0000WH_0002 CGP 17:28897781-28951771

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049167 Phf12-001 protein_coding Mus_musculus 0 2968
ENSMUST00000108360 Phf12-002 protein_coding Mus_musculus 0 2758
ENSMUST00000153428 Phf12-003 protein_coding Mus_musculus 0 1138
ENSMUST00000153747 Phf12-005 nonsense_mediated_decay Mus_musculus 0 516
ENSMUST00000131680 Phf12-004 nonsense_mediated_decay Mus_musculus 0 440
ENSMUST00000141620 Phf12-007 retained_intron Mus_musculus 0 353
ENSMUST00000123662 Phf12-006 nonsense_mediated_decay Mus_musculus 0 311
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000002 60
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000008 58
ENSMUST00000040624 Gltscr1l-201 protein_coding Mus_musculus 0.0001 55

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