C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000582449 SRSF2-006 ENSG00000161547 9606 - 17:76734147-76736555 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000582449
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000582449 14.287±0.00 14.487±9.46 15.693±0.00 6.756±2.42 16.529±0.00 13.704±7.99 14.569±0.00 22.317±0.00 6.502±1.49 15.403±10.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KE CIL_0003KE_0002 CGP 17:76732978-76738522
CIL_0003U9 CIL_0003U9_0002 CGP 17:76734115-76781449

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092404 Srsf2-001 protein_coding Mus_musculus 0 1327
ENSMUST00000175930 Mettl23-006 retained_intron Mus_musculus 0 558
ENSMUST00000176834 Srsf2-003 nonsense_mediated_decay Mus_musculus 0 549
ENSMUST00000138484 Srsf2-004 retained_intron Mus_musculus 0 549
ENSMUST00000190993 Srsf2-201 protein_coding Mus_musculus 0 547
ENSMUST00000136914 Srsf2-002 nonsense_mediated_decay Mus_musculus 0 547
ENSMUST00000177429 Srsf2-005 processed_transcript Mus_musculus 0 433
ENSDART00000080173 srsf2a-001 protein_coding Danio_rerio 0 189
ENSDART00000146446 srsf2a-005 nonsense_mediated_decay Danio_rerio 2e-37 161
ENSDART00000153102 srsf2a-009 nonsense_mediated_decay Danio_rerio 2e-37 161
ENSDART00000153210 srsf2a-010 retained_intron Danio_rerio 2e-37 161

Loading