C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDK5 regulatory subunit associated protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000584063 CDK5RAP3-004 ENSG00000108465 9606 + 17:47971104-47981772 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000584063
Transcript ID Adrenal Bladder Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000584063 12.738±0.00 2.162±0.00 4.351±1.50 2.830±0.00 10.747±0.00 1.897±0.00 4.550±1.37 30.895±27.91 3.726±0.00 19.879±15.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675
CIL_00097B CIL_00097B_0001 VISTA 17:47849190-48450331
CIL_0004MZ CIL_0004MZ_0002 CGP 17:47951967-47981774

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000134732 Cdk5rap3-010 nonsense_mediated_decay Mus_musculus 0 870
ENSMUST00000103152 Cdk5rap3-001 protein_coding Mus_musculus 0 870
ENSMUST00000149033 Cdk5rap3-008 retained_intron Mus_musculus 0 470
ENSMUST00000153305 Cdk5rap3-007 nonsense_mediated_decay Mus_musculus 0 453
ENSMUST00000130767 Cdk5rap3-006 retained_intron Mus_musculus 0 438
ENSMUST00000127048 Cdk5rap3-002 protein_coding Mus_musculus 0 422
ENSMUST00000156315 Cdk5rap3-005 protein_coding Mus_musculus 0 339
ENSMUST00000144731 Cdk5rap3-003 protein_coding Mus_musculus 0 274
ENSMUST00000147573 Cdk5rap3-011 nonsense_mediated_decay Mus_musculus 0 241
ENSMUST00000130774 Cdk5rap3-004 protein_coding Mus_musculus 5e-25 121

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