C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptogyrin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000585591 SYNGR2-009 ENSG00000108639 9606 + 17:78168594-78173335 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryENST00000585591
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary
ENST00000585591 4.997±0.00 1.712±0.00 5.210±0.00 10.168±0.00 2.800±0.00 4.399±0.00 5.491±0.00 8.758±0.00 10.579±4.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0001 VISTA 17:77940736-78544976
CIL_0004UI CIL_0004UI_0001 CGP 17:78146353-78173527
CIL_0003UA CIL_0003UA_0002 CGP 17:78168558-78187233

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016020 IEA membrane
GO:0016021 IEA:NAS integral component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026649 Syngr2-001 protein_coding Mus_musculus 0 793
ENSMUST00000120928 Syngr2-003 protein_coding Mus_musculus 0 592
ENSMUST00000177131 Syngr2-005 protein_coding Mus_musculus 0 556
ENSMUST00000177241 Syngr2-004 nonsense_mediated_decay Mus_musculus 0 399
ENSMUST00000175737 Syngr2-007 protein_coding Mus_musculus 0 366
ENSMUST00000143852 Syngr2-002 protein_coding Mus_musculus 0 361
ENSMUST00000176936 Syngr2-006 retained_intron Mus_musculus 0 322
ENSMUST00000132298 Gm20708-001 protein_coding Mus_musculus 2e-31 141

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