C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | ligase III, DNA, ATP-dependent | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000585740  |
LIG3-007 |
ENSG00000005156 |
9606 | + |
17:34980559-34992607  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00055V | CIL_00055V_0001 | CGP | 17:34580749-34981078 |
| CIL_000745 | CIL_000745_0001 | CGP | 17:34927859-34981078 |
| CIL_00055Q | CIL_00055Q_0001 | CGP | 17:34961530-35009743 |
| CIL_00055O | CIL_00055O_0001 | CGP | 17:34980494-35089319 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003677 | IEA | DNA binding |
| GO:0003910 | IEA | DNA ligase (ATP) activity |
| GO:0005634 | IDA | nucleus |
| GO:0006281 | IEA | DNA repair |
| GO:0006310 | IEA | DNA recombination |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000173727
|
Lig3-011 | protein_coding | Mus_musculus | 0 | 1007 |
|
ENSMUST00000173347
|
Lig3-007 | protein_coding | Mus_musculus | 0 | 1007 |
|
ENSMUST00000172609
|
Lig3-010 | retained_intron | Mus_musculus | 0 | 1007 |
|
ENSMUST00000173722
|
Lig3-009 | protein_coding | Mus_musculus | 0 | 998 |
|
ENSMUST00000080461
|
Lig3-002 | protein_coding | Mus_musculus | 0 | 998 |
|
ENSMUST00000092849
|
Lig3-001 | protein_coding | Mus_musculus | 0 | 998 |
|
ENSMUST00000021039
|
Lig3-201 | protein_coding | Mus_musculus | 0 | 948 |
|
ENSMUST00000131537
|
Lig3-008 | protein_coding | Mus_musculus | 0 | 869 |
|
ENSMUST00000173009
|
Lig3-006 | protein_coding | Mus_musculus | 0 | 869 |
