C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB8A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000586682 RAB8A-002 ENSG00000167461 9606 + 19:16111897-16133010 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000586682
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000586682 13.164±0.00 1.067±0.00 7.279±0.00 4.159±0.00 1.890±0.00 10.615±0.00 7.465±0.00 1.615±0.95 16.176±6.57 13.426±4.48 5.537±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IM CIL_0000IM_0001 CGP 19:16067021-16134234
CIL_0000IL CIL_0000IL_0001 CGP 19:16111629-16158575

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000139 TAS Golgi membrane
GO:0000278 TAS mitotic cell cycle
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IDA:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0005929 IDA cilium
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006904 IDA vesicle docking involved in exocytosis
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007409 ISS axonogenesis
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0017137 ISS Rab GTPase binding
GO:0019003 IDA GDP binding
GO:0030659 TAS cytoplasmic vesicle membrane
GO:0031489 IPI myosin V binding
GO:0031513 IDA nonmotile primary cilium
GO:0032869 ISS cellular response to insulin stimulus
GO:0042384 IDA cilium assembly
GO:0045335 IDA phagocytic vesicle
GO:0048210 IDA Golgi vesicle fusion to target membrane
GO:0055038 IDA recycling endosome membrane
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome
GO:0072372 IDA primary cilium
GO:0072659 ISS protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003121 Rab8a-001 protein_coding Mus_musculus 0 806
ENSMUST00000128203 Rab8a-003 retained_intron Mus_musculus 0 616
ENSMUST00000135613 Rab8a-002 processed_transcript Mus_musculus 0 311

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