C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000586778 SRSF2-016 ENSG00000161547 9606 - 17:76734163-76735661 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLungMuscleOvaryTestisENST00000586778
Transcript ID Bladder Brain Breast Colon Kidney Lung Muscle Ovary Testis
ENST00000586778 5.821±0.00 6.411±0.00 6.945±0.00 8.352±0.00 11.922±8.11 8.821±0.00 6.953±0.00 21.374±10.77 32.807±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KE CIL_0003KE_0002 CGP 17:76732978-76738522
CIL_0003U9 CIL_0003U9_0002 CGP 17:76734115-76781449

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000138484 Srsf2-004 retained_intron Mus_musculus 0 723
ENSMUST00000176834 Srsf2-003 nonsense_mediated_decay Mus_musculus 0 601
ENSMUST00000175930 Mettl23-006 retained_intron Mus_musculus 0 525
ENSMUST00000092404 Srsf2-001 protein_coding Mus_musculus 0 525
ENSMUST00000190993 Srsf2-201 protein_coding Mus_musculus 0 510
ENSMUST00000177429 Srsf2-005 processed_transcript Mus_musculus 0 510
ENSMUST00000136914 Srsf2-002 nonsense_mediated_decay Mus_musculus 0 510
ENSDART00000146446 srsf2a-005 nonsense_mediated_decay Danio_rerio 8e-39 165
ENSDART00000153102 srsf2a-009 nonsense_mediated_decay Danio_rerio 8e-39 165
ENSDART00000153210 srsf2a-010 retained_intron Danio_rerio 8e-39 165
ENSDART00000080173 srsf2a-001 protein_coding Danio_rerio 1e-37 161

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