C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glial fibrillary acidic protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000586793 GFAP-024 ENSG00000131095 9606 - 17:44910349-44915494 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UA CIL_0006UA_0001 CGP 17:44849943-44905390
CIL_0006UB CIL_0006UB_0001 CGP 17:44905008-44947711

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 IEA integrin binding
GO:0005198 IEA structural molecule activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005882 IEA intermediate filament
GO:0009611 IEA response to wounding
GO:0010625 IEA positive regulation of Schwann cell proliferation
GO:0010977 IEA negative regulation of neuron projection development
GO:0014002 IEA astrocyte development
GO:0016020 IEA membrane
GO:0019900 IEA kinase binding
GO:0030198 IEA extracellular matrix organization
GO:0031102 IEA neuron projection regeneration
GO:0042995 IEA cell projection
GO:0044297 IEA cell body
GO:0045103 IEA intermediate filament-based process
GO:0045109 IEA intermediate filament organization
GO:0051580 IEA regulation of neurotransmitter uptake
GO:0060020 IEA Bergmann glial cell differentiation
GO:0060252 IEA positive regulation of glial cell proliferation
GO:0060291 IEA long-term synaptic potentiation
GO:0097449 IEA astrocyte projection
GO:0097450 IEA astrocyte end-foot

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077902 Gfap-201 protein_coding Mus_musculus 0 1284
ENSMUST00000067444 Gfap-001 protein_coding Mus_musculus 0 1282
ENSDART00000028270 gfap-001 protein_coding Danio_rerio 0 398
ENSMUST00000023720 Krt84-201 protein_coding Mus_musculus 4e-23 113
ENSDART00000137533 krt8-003 retained_intron Danio_rerio 0.00000000002 75
ENSDART00000081215 krt8-001 protein_coding Danio_rerio 0.00000000002 75

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