C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000587506 CTC-448F2.6-001 ENSG00000266910 9606 + 19:30037423-30038156 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000587506
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000587506 0.871±0.00 1.571±0.00 0.280±0.00 0.917±0.00 1.224±0.18 0.431±0.40 0.064±0.00 0.326±0.02 0.352±0.34 0.269±0.00 0.275±0.00 2.009±1.22 0.154±0.13 0.213±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TZ CIL_0008TZ_0001 VISTA 19:29588658-30189738
CIL_000835 CIL_000835_0001 VISTA 19:29703707-30304596
CIL_000834 CIL_000834_0001 VISTA 19:29775043-30376109
CIL_00090S CIL_00090S_0001 VISTA 19:29783480-30384453
CIL_0007OB CIL_0007OB_0001 UCNEbase 19:29888853-30910612
CIL_0007PW CIL_0007PW_0001 VISTA 19:29956150-30557741
CIL_000833 CIL_000833_0001 VISTA 19:29976151-30577366

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084721 Ak6-201 protein_coding Mus_musculus 0 863
ENSMUST00000190729 Ak6-002 protein_coding Mus_musculus 0 863
ENSMUST00000167256 Taf9-201 protein_coding Mus_musculus 0 863
ENSMUST00000190594 Taf9-001 protein_coding Mus_musculus 0 863
ENSMUST00000121654 Gm12372-001 processed_pseudogene Mus_musculus 0 841
ENSMUST00000119165 Gm14335-001 processed_pseudogene Mus_musculus 0 813
ENSMUST00000190165 Taf9-002 protein_coding Mus_musculus 0 669
ENSMUST00000187792 Taf9-004 protein_coding Mus_musculus 0 627
ENSMUST00000185767 Taf9-003 protein_coding Mus_musculus 0 575

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