C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588419 HDAC5-012 ENSG00000108840 9606 - 17:44082584-44086755 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungOvaryPlacentaTestisENST00000588419
Transcript ID Lung Ovary Placenta Testis
ENST00000588419 3.641±0.00 52.300±0.00 28.911±0.00 13.734±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0005J5 CIL_0005J5_0001 CGP 17:44070735-44123702
CIL_0005J4 CIL_0005J4_0001 CGP 17:44076746-44162476

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107152 Hdac5-001 protein_coding Mus_musculus 0 959
ENSMUST00000107150 Hdac5-019 protein_coding Mus_musculus 0 959
ENSMUST00000124077 Hdac5-007 nonsense_mediated_decay Mus_musculus 0 959
ENSMUST00000149087 Hdac5-020 retained_intron Mus_musculus 0 959
ENSMUST00000008999 Hdac5-002 protein_coding Mus_musculus 0 959
ENSMUST00000133651 Hdac5-010 retained_intron Mus_musculus 0 525
ENSMUST00000126453 Hdac5-011 retained_intron Mus_musculus 0 481
ENSMUST00000107151 Hdac5-003 protein_coding Mus_musculus 0 451
ENSMUST00000155065 Hdac5-012 retained_intron Mus_musculus 0 217
ENSMUST00000118294 Hdac7-007 protein_coding Mus_musculus 7e-38 161
ENSMUST00000116409 Hdac7-002 protein_coding Mus_musculus 7e-38 161
ENSMUST00000119670 Hdac7-003 protein_coding Mus_musculus 7e-38 161
ENSMUST00000121514 Hdac7-008 protein_coding Mus_musculus 7e-38 161
ENSMUST00000088402 Hdac7-005 protein_coding Mus_musculus 7e-38 161
ENSMUST00000116408 Hdac7-001 protein_coding Mus_musculus 7e-38 161
ENSMUST00000079838 Hdac7-006 protein_coding Mus_musculus 7e-38 161
ENSMUST00000140481 Hdac5-013 retained_intron Mus_musculus 6e-29 132
ENSMUST00000134258 Hdac7-011 protein_coding Mus_musculus 2e-19 100
ENSMUST00000135651 Hdac7-012 protein_coding Mus_musculus 2e-19 100
ENSMUST00000156045 Hdac7-009 nonsense_mediated_decay Mus_musculus 2e-19 100
ENSMUST00000120683 Hdac7-004 protein_coding Mus_musculus 2e-19 100

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