C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L12 pseudogene 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588627 RPL12P38-002 ENSG00000213228 9606 - 17:60433678-60435996 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000588627
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000588627 2.726±0.00 2.682±0.00 1.236±1.10 3.065±0.00 4.175±0.00 0.340±0.25 3.904±0.00 0.702±0.00 3.062±0.00 2.084±0.00 0.197±0.07 0.018±0.00 2.182±2.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000701 CIL_000701_0001 CGP 17:60392429-60526219

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102553 Hmgn2-001 protein_coding Mus_musculus 0 865
ENSMUST00000075602 Gm10282-201 protein_coding Mus_musculus 0 832
ENSMUST00000178676 Gm10182-201 processed_pseudogene Mus_musculus 0 821
ENSMUST00000092620 Gm10275-002 processed_transcript Mus_musculus 0 719
ENSMUST00000126610 Rpl12-001 protein_coding Mus_musculus 0 719
ENSMUST00000188317 RP24-447G12.2-001 protein_coding Mus_musculus 0 719
ENSMUST00000076703 Gm9396-001 protein_coding Mus_musculus 0 652
ENSMUST00000100472 Hmgn2-007 protein_coding Mus_musculus 0 649
ENSMUST00000105893 Hmgn2-009 protein_coding Mus_musculus 0 636
ENSMUST00000102552 Hmgn2-003 protein_coding Mus_musculus 0 573
ENSMUST00000168697 Gm10275-001 transcribed_processed_pseudogene Mus_musculus 0 564
ENSMUST00000119608 Gm11425-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000102811 Rpl12-002 processed_transcript Mus_musculus 0 545
ENSMUST00000121857 Gm15793-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000145025 Hmgn2-002 retained_intron Mus_musculus 0 532
ENSMUST00000116168 Rpl12-ps1-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000122012 Gm6285-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000138458 Hmgn2-004 processed_transcript Mus_musculus 0 507
ENSMUST00000137456 Hmgn2-010 processed_transcript Mus_musculus 0 488
ENSMUST00000123234 Hmgn2-012 protein_coding Mus_musculus 0 481
ENSMUST00000125266 Hmgn2-011 processed_transcript Mus_musculus 0 481
ENSMUST00000092011 Gm16519-201 protein_coding Mus_musculus 0 455
ENSMUST00000071515 Gm7117-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000079794 Gm15732-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000121537 Gm7931-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000189273 RP23-429J21.2-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000093430 Gm7125-201 processed_pseudogene Mus_musculus 0 337
ENSMUST00000159886 Gm10357-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000120716 Hmgn2-ps1-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000153622 Hmgn2-013 retained_intron Mus_musculus 0 322
ENSMUST00000136327 Hmgn2-006 protein_coding Mus_musculus 0 322
ENSMUST00000120483 Gm14008-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000130809 Hmgn2-005 retained_intron Mus_musculus 0 316
ENSMUST00000189471 RP24-176P22.2-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000121298 Rpl12-ps2-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000115986 Hmgn2l6-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000184601 Gm10105-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000120954 Gm12196-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000071770 Gm5899-201 processed_pseudogene Mus_musculus 0 246
ENSMUST00000118775 Gm15195-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000172474 Gm20430-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000120815 Gm14069-001 unprocessed_pseudogene Mus_musculus 0 217
ENSMUST00000117322 Gm12038-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000154340 Rpl12-003 processed_transcript Mus_musculus 2.00386e-43 182
ENSMUST00000134912 Rpl12-007 processed_transcript Mus_musculus 7e-33 147
ENSMUST00000136859 Hmgn2-008 retained_intron Mus_musculus 5e-29 134
ENSMUST00000121669 Gm11745-001 processed_pseudogene Mus_musculus 2e-22 111

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