C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SURP and G patch domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588731 SUGP1-003 ENSG00000105705 9606 - 19:19276513-19320509 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyENST00000588731
Transcript ID Bladder Brain Colon Heart Kidney
ENST00000588731 0.869±0.00 2.600±0.00 1.209±0.00 0.574±0.00 0.479±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NS CIL_0004NS_0002 CGP 19:19276018-19358755

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005681 IEA spliceosomal complex
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000011450 Sugp1-201 protein_coding Mus_musculus 0 1565

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