C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scaffold attachment factor B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588852 SAFB-002 ENSG00000160633 9606 + 19:5623153-5668326 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000588852
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000588852 17.642±0.00 14.005±0.00 3.896±0.00 15.156±13.33 11.919±0.00 11.866±10.91 8.071±0.00 19.457±0.00 1.747±0.00 8.777±7.25 18.854±0.00 6.423±5.49 15.866±0.00 24.961±11.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JF CIL_0003JF_0001 CGP 19:5455431-5624046
CIL_0003UZ CIL_0003UZ_0001 CGP 19:5586999-5668478

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001047 IEA core promoter binding
GO:0003676 IEA nucleic acid binding
GO:0003682 IEA chromatin binding
GO:0003690 TAS double-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0030520 IEA intracellular estrogen receptor signaling pathway
GO:0040007 IEA growth
GO:0042445 IEA hormone metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182533 Safb-006 protein_coding Mus_musculus 0 1688
ENSMUST00000095224 Safb-001 protein_coding Mus_musculus 0 1655
ENSMUST00000182031 Safb-002 retained_intron Mus_musculus 0 575
ENSMUST00000133604 Safb2-004 nonsense_mediated_decay Mus_musculus 0 327
ENSMUST00000075510 Safb2-001 protein_coding Mus_musculus 0 327
ENSMUST00000182378 Safb-004 retained_intron Mus_musculus 0 261
ENSMUST00000134741 Safb2-005 retained_intron Mus_musculus 9.99995e-41 172

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