C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000589119 MED16-006 ENSG00000175221 9606 - 19:867963-891131 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000589119
Transcript ID Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000589119 0.467±0.00 4.540±0.00 3.688±0.00 2.663±0.00 6.942±0.00 4.528±0.00 6.591±0.00 12.967±0.00 13.813±0.00 16.037±3.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_0000HX CIL_0000HX_0001 CGP 19:859643-893218
CIL_00011Z CIL_00011Z_0001 CGP 19:867630-913245

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003712 IDA transcription cofactor activity
GO:0003713 TAS transcription coactivator activity
GO:0003824 IEA catalytic activity
GO:0004872 IDA receptor activity
GO:0005515 IEA protein binding
GO:0005634 NAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 IDA transcription initiation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016592 IDA mediator complex
GO:0030375 IDA thyroid hormone receptor coactivator activity
GO:0030518 IDA intracellular steroid hormone receptor signaling pathway
GO:0030521 IDA androgen receptor signaling pathway
GO:0042809 NAS vitamin D receptor binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046966 IDA thyroid hormone receptor binding
GO:2000273 IDA positive regulation of receptor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165684 Med16-003 protein_coding Mus_musculus 0 2597
ENSMUST00000105378 Med16-001 protein_coding Mus_musculus 0 2597
ENSMUST00000163125 Med16-002 retained_intron Mus_musculus 0 1083
ENSMUST00000164705 Med16-005 protein_coding Mus_musculus 0 619
ENSMUST00000166964 Med16-006 protein_coding Mus_musculus 0 531
ENSMUST00000170409 Med16-004 protein_coding Mus_musculus 0 364

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