C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scaffold attachment factor B2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000591120 SAFB2-002 ENSG00000130254 9606 - 19:5611876-5622776 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverLungENST00000591120
Transcript ID Bladder Brain Colon Heart Kidney Liver Lung
ENST00000591120 11.181±0.00 1.887±0.00 6.772±0.00 0.678±0.00 2.253±0.00 2.534±0.00 4.932±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JF CIL_0003JF_0001 CGP 19:5455431-5624046
CIL_0003UZ CIL_0003UZ_0001 CGP 19:5586999-5668478

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0042802 IPI identical protein binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095224 Safb-001 protein_coding Mus_musculus 8.40779e-45 185
ENSMUST00000182800 Safb-011 protein_coding Mus_musculus 8.40779e-45 185
ENSMUST00000182533 Safb-006 protein_coding Mus_musculus 8.40779e-45 185
ENSMUST00000182031 Safb-002 retained_intron Mus_musculus 8.40779e-45 185

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