C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000592549 RP11-824M15.3-001 ENSG00000267669 9606 + 18:59824025-59825261 transcribed_processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMusclePlacentaENST00000592549
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Placenta
ENST00000592549 0.120±0.00 0.045±0.00 0.038±0.00 0.017±0.00 0.032±0.00 0.037±0.00 0.016±0.00 0.069±0.00 0.031±0.00 0.054±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007FI CIL_0007FI_0001 CGP 18:59430940-59904306

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086519 Rplp0-001 protein_coding Mus_musculus 0 922
ENSMUST00000076373 Gm8730-201 protein_coding Mus_musculus 0 917
ENSMUST00000121456 Gm14165-001 processed_pseudogene Mus_musculus 0 904
ENSMUST00000122125 Rplp0-ps1-001 processed_pseudogene Mus_musculus 0 784
ENSMUST00000156359 Rplp0-004 protein_coding Mus_musculus 0 708
ENSMUST00000145890 Gucd1-002 nonsense_mediated_decay Mus_musculus 0 638
ENSMUST00000152976 Rplp0-002 protein_coding Mus_musculus 0 440
ENSMUST00000155584 Rplp0-003 retained_intron Mus_musculus 0 390
ENSMUST00000121323 Gm8199-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000163928 Gm8338-001 processed_pseudogene Mus_musculus 5.60519e-45 185
ENSMUST00000118250 Gm8595-001 processed_pseudogene Mus_musculus 1e-37 161

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