C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: troponin T type 1 (skeletal, slow)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000593194 TNNT1-015 ENSG00000105048 9606 - 19:55132826-55141891 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonMuscleOvaryPlacentaTestisENST00000593194
Transcript ID Brain Breast Colon Muscle Ovary Placenta Testis
ENST00000593194 1.656±0.00 93.775±0.00 0.344±0.00 729.438±0.00 1.771±0.00 9.752±10.27 63.187±60.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RJ CIL_0003RJ_0001 CGP 19:55090913-55149354
CIL_00065K CIL_00065K_0001 CGP 19:55132794-55157773

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005861 IEA troponin complex
GO:0006937 IEA regulation of muscle contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178163 Tnnt1-201 protein_coding Mus_musculus 0 684
ENSMUST00000163710 Tnnt1-003 protein_coding Mus_musculus 0 684
ENSMUST00000108587 Tnnt1-002 protein_coding Mus_musculus 0 684
ENSMUST00000071798 Tnnt1-001 protein_coding Mus_musculus 0 684
ENSMUST00000166161 Tnnt1-004 protein_coding Mus_musculus 0 682
ENSMUST00000166268 Tnnt1-011 protein_coding Mus_musculus 0 520
ENSMUST00000166959 Tnnt1-006 protein_coding Mus_musculus 0 425
ENSMUST00000169571 Tnnt1-008 retained_intron Mus_musculus 0 333

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