C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, kainate 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000593562 GRIK5-004 ENSG00000105737 9606 - 19:41998814-42069498 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverLungOvaryTestisENST00000593562
Transcript ID Bladder Brain Breast Liver Lung Ovary Testis
ENST00000593562 1.432±0.00 1.714±0.00 0.100±0.06 0.675±0.00 0.023±0.00 0.117±0.00 2.359±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YN CIL_0003YN_0001 CGP 19:41966582-42069498
CIL_0003XZ CIL_0003XZ_0001 CGP 19:41998321-42081565

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0005234 IBA:IEA extracellular-glutamate-gated ion channel activity
GO:0005886 TAS plasma membrane
GO:0007268 TAS synaptic transmission
GO:0015277 IDA kainate selective glutamate receptor activity
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0032983 IBA kainate selective glutamate receptor complex
GO:0034220 IEA ion transmembrane transport
GO:0035235 IEA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0042734 IBA presynaptic membrane
GO:0045211 IBA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003468 Grik5-201 protein_coding Mus_musculus 0 4623
ENSDART00000114472 GRIK5 (2 of 2)-201 protein_coding Danio_rerio 0 1288
ENSDART00000122055 grik5-202 protein_coding Danio_rerio 0 918
ENSDART00000114766 grik5-201 protein_coding Danio_rerio 0 913
ENSMUST00000034515 Grik4-201 protein_coding Mus_musculus 0 822
ENSMUST00000114865 Grik4-001 protein_coding Mus_musculus 0 822
ENSMUST00000030676 Grik3-001 protein_coding Mus_musculus 0 211

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