C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000593863 RPS19-006 ENSG00000105372 9606 + 19:41860446-41871416 protein_coding

Homo sapiens EnsemblGRCh38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryENST00000593863
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary
ENST00000593863 140.584±0.00 430.069±0.00 76.177±0.00 494.370±0.00 198.989±0.00 203.843±0.00 421.051±0.00 1510.200±0.00 296.341±256.49 245.832±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WP CIL_0003WP_0001 CGP 19:41844743-41872926
CIL_0003W3 CIL_0003W3_0001 CGP 19:41859918-41881372

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000028 IMP ribosomal small subunit assembly
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000462 IMP maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0002548 IDA monocyte chemotaxis
GO:0003735 IEA:IDA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0005840 IEA:IDA ribosome
GO:0005925 IDA focal adhesion
GO:0006364 IMP rRNA processing
GO:0006412 IEA:IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0007000 IMP nucleolus organization
GO:0009991 TAS response to extracellular stimulus
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017134 IPI fibroblast growth factor binding
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019901 IPI protein kinase binding
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030218 IMP erythrocyte differentiation
GO:0030490 IMP maturation of SSU-rRNA
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0042803 IDA protein homodimerization activity
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0051262 IDA protein tetramerization
GO:0051272 TAS positive regulation of cellular component movement
GO:0060265 IDA positive regulation of respiratory burst involved in inflammatory response
GO:0060266 IDA negative regulation of respiratory burst involved in inflammatory response
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108429 Rps19-006 protein_coding Mus_musculus 0 723
ENSMUST00000108430 Rps19-001 protein_coding Mus_musculus 0 706
ENSMUST00000181233 Rps19-ps6-001 processed_pseudogene Mus_musculus 0 665
ENSMUST00000091925 Rps19-ps4-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000168472 Rps19-ps1-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000100614 Rps19-ps2-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000116122 Rps19-ps7-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000124035 Rps19-008 protein_coding Mus_musculus 0 606
ENSMUST00000108428 Rps19-003 protein_coding Mus_musculus 0 606
ENSMUST00000153451 Rps19-005 protein_coding Mus_musculus 0 588
ENSMUST00000156372 Rps19-007 protein_coding Mus_musculus 0 568
ENSMUST00000116174 Rps19-ps3-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000159750 Rps19-ps10-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000161787 Rps19-ps9-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000160308 Rps19-ps11-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000180504 Rps19-ps13-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000180714 Rps19-ps8-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000181937 Rps19-ps12-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000129847 Rps19-004 nonsense_mediated_decay Mus_musculus 0 444
ENSMUST00000130335 Rps19-010 processed_transcript Mus_musculus 0 442
ENSMUST00000180745 Rps19-ps5-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000119684 Gm9516-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000119451 Gm14861-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000119674 Gm15504-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000119807 Gm15745-001 processed_pseudogene Mus_musculus 6.99949e-42 174
ENSMUST00000146004 Rps19-009 processed_transcript Mus_musculus 8.99998e-41 171
ENSMUST00000121832 Rps19-ps14-001 processed_pseudogene Mus_musculus 1e-38 163
ENSMUST00000138662 Rps19-002 retained_intron Mus_musculus 2e-32 143

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