C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: unconventional SNARE in the ER 1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000595101 USE1-002 ENSG00000053501 9606 + 19:17215388-17218826 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalKidneyLiverTestisENST00000595101
Transcript ID Adrenal Kidney Liver Testis
ENST00000595101 2.010±0.00 0.451±0.00 0.110±0.00 1.226±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GE CIL_0006GE_0001 CGP 19:17075781-17219829
CIL_0007CI CIL_0007CI_0001 CGP 19:17215346-17229219

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0007041 ISS lysosomal transport
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0030163 ISS protein catabolic process
GO:0032940 ISS secretion by cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105321 Nfic-001 protein_coding Mus_musculus 0.000000001 69
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000002 62
ENSMUST00000091246 Flcn-005 protein_coding Mus_musculus 0.0000007 60
ENSMUST00000148151 Flcn-003 retained_intron Mus_musculus 0.0000007 60
ENSMUST00000102697 Flcn-004 protein_coding Mus_musculus 0.0000007 60

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