C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000595659 CCDC9-004 ENSG00000105321 9606 + 19:47257540-47260382 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonKidneyLiverOvaryPlacentaTestisENST00000595659
Transcript ID Bladder Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000595659 2.847±0.00 9.468±0.00 6.689±0.00 7.468±0.00 3.674±0.00 9.591±2.16 17.689±0.00 17.116±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G1 CIL_0008G1_0001 VISTA 19:46806794-47408636

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000144186 Ccdc9-006 retained_intron Mus_musculus 0 220
ENSMUST00000174270 Ccdc9-014 protein_coding Mus_musculus 0 220
ENSMUST00000041010 Ccdc9-001 protein_coding Mus_musculus 0 220
ENSMUST00000118976 Ccdc9-002 protein_coding Mus_musculus 0 220
ENSMUST00000146609 Ccdc9-004 protein_coding Mus_musculus 0 219
ENSMUST00000150528 Ccdc9-005 protein_coding Mus_musculus 0 209
ENSMUST00000145519 Ccdc9-008 protein_coding Mus_musculus 0 189
ENSMUST00000148741 Ccdc9-007 nonsense_mediated_decay Mus_musculus 1e-38 163

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