C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000598261 RPS19-007 ENSG00000105372 9606 + 19:41860769-41869146 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonOvaryTestisENST00000598261
Transcript ID Adipose Brain Colon Ovary Testis
ENST00000598261 134.718±0.00 111.501±0.00 532.133±0.00 1179.280±0.00 325.698±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WP CIL_0003WP_0001 CGP 19:41844743-41872926
CIL_0003W3 CIL_0003W3_0001 CGP 19:41859918-41881372

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000181233 Rps19-ps6-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000124035 Rps19-008 protein_coding Mus_musculus 0 370
ENSMUST00000153451 Rps19-005 protein_coding Mus_musculus 0 363
ENSMUST00000156372 Rps19-007 protein_coding Mus_musculus 0 361
ENSMUST00000108429 Rps19-006 protein_coding Mus_musculus 0 361
ENSMUST00000108428 Rps19-003 protein_coding Mus_musculus 0 361
ENSMUST00000108430 Rps19-001 protein_coding Mus_musculus 0 361
ENSMUST00000091925 Rps19-ps4-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000168472 Rps19-ps1-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000100614 Rps19-ps2-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000116122 Rps19-ps7-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000159750 Rps19-ps10-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000116174 Rps19-ps3-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000161787 Rps19-ps9-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000129847 Rps19-004 nonsense_mediated_decay Mus_musculus 0 267
ENSMUST00000180714 Rps19-ps8-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000138662 Rps19-002 retained_intron Mus_musculus 6e-35 150
ENSMUST00000180745 Rps19-ps5-001 processed_pseudogene Mus_musculus 1e-32 143

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