C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000600996 AC005795.1-001 ENSG00000268034 9606 + 19:41506152-41506898 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastLiverMuscleOvaryPlacentaTestisENST00000600996
Transcript ID Adipose Adrenal Brain Breast Liver Muscle Ovary Placenta Testis
ENST00000600996 0.038±0.00 0.086±0.00 0.043±0.00 0.088±0.00 0.020±0.00 0.069±0.03 0.035±0.01 0.015±0.00 0.109±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TR CIL_0008TR_0001 VISTA 19:41131081-41732986

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029549 Tpm3-003 protein_coding Mus_musculus 0 1020
ENSMUST00000072359 Tpm3-rs7-201 protein_coding Mus_musculus 0 1014
ENSMUST00000062193 Tpm3-201 protein_coding Mus_musculus 0 854
ENSMUST00000119570 Tpm3-001 protein_coding Mus_musculus 0 854
ENSMUST00000119158 Tpm3-005 protein_coding Mus_musculus 0 750
ENSMUST00000118566 Tpm3-004 protein_coding Mus_musculus 0 750
ENSMUST00000131354 Tpm3-006 retained_intron Mus_musculus 0 595
ENSMUST00000147430 Tpm3-011 retained_intron Mus_musculus 0 595
ENSMUST00000121503 Tpm3-002 protein_coding Mus_musculus 0 584
ENSMUST00000149432 Tpm3-007 protein_coding Mus_musculus 0 431
ENSMUST00000133281 Tpm3-010 retained_intron Mus_musculus 0 396
ENSMUST00000133361 Tpm3-013 retained_intron Mus_musculus 0 390
ENSMUST00000149115 Tpm3-009 retained_intron Mus_musculus 0 283
ENSMUST00000151798 Tpm3-012 retained_intron Mus_musculus 0 270
ENSMUST00000149734 Tpm3-014 retained_intron Mus_musculus 0 252
ENSMUST00000127955 Tpm3-008 protein_coding Mus_musculus 0 196

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