C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type I, beta subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000602150 SCN1B-004 ENSG00000105711 9606 + 19:35036899-35040448 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonKidneyLungOvaryTestisENST00000602150
Transcript ID Adrenal Colon Kidney Lung Ovary Testis
ENST00000602150 0.816±0.00 0.037±0.00 0.472±0.00 0.110±0.00 0.131±0.09 0.540±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UF CIL_0003UF_0002 CGP 19:34994784-35040448

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000187469 Scn1b-003 retained_intron Mus_musculus 0 198
ENSMUST00000098548 Scn1b-001 protein_coding Mus_musculus 0 198
ENSMUST00000188002 Scn1b-004 protein_coding Mus_musculus 0 198
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000002 69
ENSMUST00000167588 Trim67-201 protein_coding Mus_musculus 0.000000008 68
ENSMUST00000167316 Zfp655-202 protein_coding Mus_musculus 0.00006 55
ENSMUST00000038562 Spsb1-001 protein_coding Mus_musculus 0.0002 53

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