C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000606248 MED16-023 ENSG00000175221 9606 - 19:867964-893216 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartOvaryENST00000606248
Transcript ID Adrenal Brain Colon Heart Ovary
ENST00000606248 4.073±0.00 2.244±0.00 5.262±0.00 0.266±0.00 6.364±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_0000HX CIL_0000HX_0001 CGP 19:859643-893218
CIL_00011Z CIL_00011Z_0001 CGP 19:867630-913245

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005515 IEA protein binding
GO:0008152 IEA metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165684 Med16-003 protein_coding Mus_musculus 0 1997
ENSMUST00000105378 Med16-001 protein_coding Mus_musculus 0 1997
ENSMUST00000163125 Med16-002 retained_intron Mus_musculus 0 1083
ENSMUST00000164705 Med16-005 protein_coding Mus_musculus 0 619
ENSMUST00000166964 Med16-006 protein_coding Mus_musculus 0 531
ENSMUST00000170409 Med16-004 protein_coding Mus_musculus 0 364

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