C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TM2 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000606498 TM2D1-012 ENSG00000162604 9606 - 1:61681046-61725141 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonKidneyLiverMuscleOvaryPlacentaTestisENST00000606498
Transcript ID Adipose Brain Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000606498 2.033±0.00 6.548±0.00 2.359±0.00 5.122±0.00 1.829±0.00 1.041±0.00 7.044±0.00 5.760±0.00 7.675±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NA CIL_0001NA_0001 CGP 1:60865259-61725423
CIL_0008LM CIL_0008LM_0001 VISTA 1:61152123-61754518
CIL_00085K CIL_00085K_0001 VISTA 1:61279788-61882487
CIL_00094S CIL_00094S_0001 VISTA 1:61287761-61890236
CIL_0002G1 CIL_0002G1_0001 CGP 1:61681046-62163920

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0004930 IEA G-protein coupled receptor activity
GO:0005887 IEA integral component of plasma membrane
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0097190 IEA apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102793 Tm2d1-001 protein_coding Mus_musculus 0 730
ENSMUST00000030292 Tm2d1-002 protein_coding Mus_musculus 0 651
ENSMUST00000172604 Gm18284-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000107051 Tm2d1-003 protein_coding Mus_musculus 0 571
ENSMUST00000125034 Tm2d1-005 nonsense_mediated_decay Mus_musculus 0 327
ENSMUST00000143116 Tm2d1-004 protein_coding Mus_musculus 0 302

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