C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sin3A-associated protein, 18kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000607003 SAP18-009 ENSG00000150459 9606 + 13:21140578-21149082 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartMuscleOvaryPlacentaENST00000607003
Transcript ID Adipose Brain Breast Heart Muscle Ovary Placenta
ENST00000607003 5.304±0.00 10.261±0.00 4.529±0.00 9.333±0.00 5.237±0.00 12.485±3.02 12.092±2.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SR CIL_0003SR_0001 CGP 13:20973032-21149084
CIL_0003SS CIL_0003SS_0001 CGP 13:21140514-21176602

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 TAS histone deacetylase complex
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0035145 IDA exon-exon junction complex
GO:0043065 IDA positive regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0061574 IDA ASAP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000128764 Sap18-001 protein_coding Mus_musculus 0 869
ENSMUST00000074053 Gm10094-201 protein_coding Mus_musculus 0 841
ENSMUST00000111267 Sap18-002 protein_coding Mus_musculus 0 558
ENSMUST00000111268 Sap18-003 protein_coding Mus_musculus 0 553
ENSMUST00000143600 Sap18-005 protein_coding Mus_musculus 0 523
ENSMUST00000119198 Gm12219-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000111269 Sap18-006 protein_coding Mus_musculus 0 292
ENSMUST00000131455 Sap18-004 retained_intron Mus_musculus 0 272

Loading