C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB guanine nucleotide exchange factor (GEF) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000607882 RABGEF1-007 ENSG00000154710 9606 + 7:66682164-66809662 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000607882
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000607882 4.174±0.00 4.765±0.00 0.529±0.00 3.766±1.65 4.829±0.00 5.556±0.00 1.701±0.66 0.704±0.00 1.440±0.41 3.034±0.00 2.735±0.00 5.980±3.80 4.139±1.49 15.318±5.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024I CIL_00024I_0001 CGP 7:66205199-66811187
CIL_0005UP CIL_0005UP_0001 CGP 7:66628881-66811464
CIL_000256 CIL_000256_0001 CGP 7:66682164-66958551

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026390 Rabgef1-002 protein_coding Mus_musculus 0 1149
ENSMUST00000119797 Rabgef1-001 protein_coding Mus_musculus 0 1149
ENSMUST00000147493 Rabgef1-007 retained_intron Mus_musculus 0 501
ENSMUST00000143727 Rabgef1-005 retained_intron Mus_musculus 0 446
ENSMUST00000119027 Rabgef1-004 protein_coding Mus_musculus 0 444
ENSMUST00000148264 Rabgef1-003 protein_coding Mus_musculus 0 440

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