C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single stranded DNA binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000610401 SSBP3-201 ENSG00000157216 9606 - 1:54225433-54406395 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000610401
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000610401 7.000±0.00 6.468±0.00 49.374±0.00 8.522±0.00 7.103±5.26 16.271±0.00 11.539±0.00 4.062±3.02 12.455±0.00 13.889±0.00 33.983±17.80 9.826±3.10 12.736±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085J CIL_00085J_0001 VISTA 1:54159373-54763153
CIL_0006W6 CIL_0006W6_0002 CGP 1:54184041-54413479
CIL_00005A CIL_00005A_0002 CGP 1:54225432-54639192

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072753 Ssbp3-002 protein_coding Mus_musculus 0 2435
ENSMUST00000097934 Ssbp3-006 protein_coding Mus_musculus 0 2078
ENSMUST00000124936 Ssbp3-007 processed_transcript Mus_musculus 0 1639
ENSMUST00000141963 Ssbp3-004 processed_transcript Mus_musculus 0 1639
ENSMUST00000030367 Ssbp3-001 protein_coding Mus_musculus 0 1502
ENSMUST00000146659 Ssbp3-003 processed_transcript Mus_musculus 0 1476
ENSMUST00000149926 Ssbp3-017 protein_coding Mus_musculus 0 979
ENSMUST00000133827 Ssbp3-014 processed_transcript Mus_musculus 0 944
ENSMUST00000132506 Ssbp3-011 processed_transcript Mus_musculus 0 608
ENSMUST00000136487 Ssbp3-016 processed_transcript Mus_musculus 0 568
ENSMUST00000138475 Ssbp3-008 processed_transcript Mus_musculus 0 566
ENSMUST00000150915 Ssbp3-005 processed_transcript Mus_musculus 0 518
ENSMUST00000131440 Ssbp3-010 protein_coding Mus_musculus 0 449
ENSMUST00000148842 Ssbp3-009 processed_transcript Mus_musculus 0 364
ENSMUST00000137786 Ssbp3-012 processed_transcript Mus_musculus 0 344
ENSMUST00000131111 Ssbp3-013 processed_transcript Mus_musculus 0 239
ENSMUST00000156288 Ssbp3-015 processed_transcript Mus_musculus 0 219

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