C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 22
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000610672 MED22-007 ENSG00000148297 9606 - 9:133338323-133347703 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyMuscleTestisENST00000610672
Transcript ID Kidney Muscle Testis
ENST00000610672 0.192±0.00 0.089±0.00 0.447±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DI CIL_0006DI_0001 CGP 9:133330716-133348131
CIL_0006DH CIL_0006DH_0001 CGP 9:133338323-133351426

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001104 IEA RNA polymerase II transcription cofactor activity
GO:0005515 IPI protein binding
GO:0005737 TAS cytoplasm
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0016592 IEA:IDA mediator complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015920 Med22-002 protein_coding Mus_musculus 0 791
ENSMUST00000102899 Med22-001 protein_coding Mus_musculus 0 553
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 473
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 460
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 460
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 424
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 418
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 407
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 401
ENSMUST00000119332 Gm13604-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 396
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 396
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000118772 Gm11975-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 385
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 379
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000139815 Med22-003 protein_coding Mus_musculus 0 311
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 265
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 200
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 9.94922e-44 183
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 1e-37 163
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 1e-27 130

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