C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000610907 PABPC1-201 ENSG00000070756 9606 - 8:100704298-100721508 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastKidneyOvaryPlacentaTestisENST00000610907
Transcript ID Adipose Adrenal Breast Kidney Ovary Placenta Testis
ENST00000610907 78.637±0.00 61.961±0.00 46.459±0.00 26.174±0.00 811.252±0.00 290.805±0.00 451.949±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001809 Pabpc1-001 protein_coding Mus_musculus 0 2021
ENSMUST00000063219 Pabpc2-001 protein_coding Mus_musculus 0 1269
ENSMUST00000156793 Pabpc1-006 processed_transcript Mus_musculus 0 1110
ENSMUST00000057190 Pabpc6-201 protein_coding Mus_musculus 0 894
ENSMUST00000162696 Gm16580-001 processed_pseudogene Mus_musculus 0 723
ENSMUST00000146327 Pabpc1-002 processed_transcript Mus_musculus 0 713
ENSMUST00000155116 Pabpc1-007 protein_coding Mus_musculus 0 455
ENSMUST00000147116 Pabpc1-004 processed_transcript Mus_musculus 0 455
ENSMUST00000146577 Pabpc1-003 processed_transcript Mus_musculus 0 455
ENSMUST00000142357 Pabpc1-005 processed_transcript Mus_musculus 0 339
ENSMUST00000119625 Gm11693-001 processed_pseudogene Mus_musculus 3e-20 104

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