C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SV2 related protein homolog (rat)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000610966 SVOP-001 ENSG00000166111 9606 - 12:108907741-109021240 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000610966
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000610966 0.051±0.00 0.164±0.00 0.098±0.00 4.875±3.03 0.082±0.01 0.087±0.07 0.172±0.00 0.067±0.00 0.032±0.02 0.054±0.00 0.045±0.00 0.013±0.00 0.028±0.00 0.171±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VS CIL_0001VS_0001 CGP 12:108858932-109021240
CIL_0001VR CIL_0001VR_0001 CGP 12:108907741-109088026

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008021 ISS synaptic vesicle
GO:0015075 IEA ion transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0022857 IEA transmembrane transporter activity
GO:0030054 IEA cell junction
GO:0034220 IEA ion transmembrane transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058472 Svop-001 protein_coding Mus_musculus 0 2095
ENSMUST00000134790 Svop-003 processed_transcript Mus_musculus 0 1792
ENSMUST00000140151 Svop-002 retained_intron Mus_musculus 0 798
ENSMUST00000150106 Svop-004 protein_coding Mus_musculus 0 599
ENSMUST00000149480 Svop-005 retained_intron Mus_musculus 0 553
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00003 57

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