C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000611299 SYTL3-203 ENSG00000164674 9606 + 6:158650014-158764876 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartLiverLungOvaryTestisENST00000611299
Transcript ID Adrenal Breast Heart Liver Lung Ovary Testis
ENST00000611299 0.944±0.00 1.485±0.00 0.662±0.00 0.835±0.00 1.924±0.00 0.469±0.15 0.365±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004W4 CIL_0004W4_0001 CGP 6:158636474-158764876
CIL_0004W5 CIL_0004W5_0001 CGP 6:158650014-158819412

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005543 IEA phospholipid binding
GO:0005544 IEA calcium-dependent phospholipid binding
GO:0006886 IEA intracellular protein transport
GO:0006887 IEA exocytosis
GO:0016020 IEA membrane
GO:0017137 IEA Rab GTPase binding
GO:0019897 IEA extrinsic component of plasma membrane
GO:0042043 IEA neurexin family protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097430 Sytl3-002 protein_coding Mus_musculus 0 1609
ENSMUST00000159394 Sytl3-001 nonsense_mediated_decay Mus_musculus 0 1362
ENSMUST00000160483 Sytl3-006 protein_coding Mus_musculus 0 1303
ENSMUST00000159880 Sytl3-008 protein_coding Mus_musculus 0 1123
ENSMUST00000162635 Sytl3-003 nonsense_mediated_decay Mus_musculus 0 1123
ENSMUST00000161118 Sytl3-007 nonsense_mediated_decay Mus_musculus 0 972
ENSMUST00000160771 Sytl3-009 retained_intron Mus_musculus 0 586
ENSMUST00000115763 Sytl3-005 nonsense_mediated_decay Mus_musculus 0 558

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