C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sec1 family domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000611795 SCFD2-201 ENSG00000184178 9606 - 4:53273579-53365941 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverLungMuscleOvaryTestisENST00000611795
Transcript ID Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000611795 1.027±0.00 0.720±0.00 3.022±0.00 1.279±0.00 2.494±0.00 1.696±0.00 1.236±0.00 2.199±0.00 2.495±0.00 1.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082M CIL_00082M_0001 VISTA 4:52657438-53260296
CIL_0008RT CIL_0008RT_0001 VISTA 4:52776116-53378130
CIL_0001CR CIL_0001CR_0001 CGP 4:52862290-53366075
CIL_0001CS CIL_0001CS_0001 CGP 4:52872982-54295272

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121330 Scfd2-003 protein_coding Mus_musculus 0 1367
ENSMUST00000113542 Scfd2-002 protein_coding Mus_musculus 0 1367
ENSMUST00000072857 Scfd2-001 protein_coding Mus_musculus 0 1367
ENSMUST00000151474 Scfd2-004 protein_coding Mus_musculus 0 1358
ENSMUST00000075848 Scfd2-005 nonsense_mediated_decay Mus_musculus 0 1358
ENSMUST00000123203 Scfd2-006 processed_transcript Mus_musculus 0 994

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