Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	SLIT-ROBO Rho GTPase activating protein 2B
ENST00000612199	SRGAP2B-001	ENSG00000196369	9606	-	1:144887265-145095528	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENST00000612199	1.091±0.00	0.506±0.00	0.360±0.00	0.971±0.22	0.458±0.16	0.280±0.11	0.183±0.06	0.684±0.62	0.329±0.23	0.845±0.35	0.066±0.02	0.607±0.33	0.893±0.31	0.309±0.03

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_00012Y	CIL_00012Y_0002	CGP	1:144887265-145112696

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0007399	IEA	nervous system development

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSMUST00000186543	Srgap2-004	protein_coding	Mus_musculus	0	2261
ENSMUST00000097588	Srgap2-001	protein_coding	Mus_musculus	0	2261
ENSMUST00000185596	Srgap2-005	protein_coding	Mus_musculus	0	1253
ENSMUST00000189893	Srgap2-002	retained_intron	Mus_musculus	0	1107
ENSDART00000045391	srgap2a-201	protein_coding	Danio_rerio	0	946
ENSDART00000103865	srgap2a-001	protein_coding	Danio_rerio	0	946
ENSMUST00000185445	Srgap2-009	protein_coding	Mus_musculus	0	496
ENSMUST00000060215	Srgap3-003	retained_intron	Mus_musculus	0	366
ENSMUST00000113169	Srgap3-004	protein_coding	Mus_musculus	0	366
ENSMUST00000088373	Srgap3-001	protein_coding	Mus_musculus	0	366
ENSMUST00000188770	Srgap2-006	protein_coding	Mus_musculus	0	261
ENSMUST00000187273	Srgap2-010	protein_coding	Mus_musculus	0	241
ENSDART00000048707	srgap2b-201	protein_coding	Danio_rerio	1e-39	171
ENSDART00000014897	srgap2b-001	protein_coding	Danio_rerio	1e-39	171
ENSMUST00000173269	Neu1-002	retained_intron	Mus_musculus	0.0001	55

Loading