C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000612779 HOXA2-002 ENSG00000105996 9606 - 7:27100694-27102686 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungENST00000612779
Transcript ID Adrenal Breast Colon Kidney Liver Lung
ENST00000612779 0.444±0.00 0.189±0.15 0.626±0.14 0.189±0.00 0.025±0.00 0.152±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PE CIL_0003PE_0001 CGP 7:27092993-27102811

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000014848 Hoxa2-001 protein_coding Mus_musculus 0 1098
ENSMUST00000128102 RP23-103L13.12-001 protein_coding Mus_musculus 0 370
ENSDART00000009827 hoxa2b-001 protein_coding Danio_rerio 0 322

Loading