C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2bn
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000612898 HIST1H2BN-001 ENSG00000233822 9606 + 6:27837760-27839482 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverLungMusclePlacentaENST00000612898
Transcript ID Adrenal Brain Colon Liver Lung Muscle Placenta
ENST00000612898 0.379±0.00 0.776±0.00 0.064±0.00 0.174±0.12 0.364±0.10 0.389±0.00 0.063±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UC CIL_0000UC_0008 CGP 6:27837760-27865798

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 NAS:IEA nucleosome
GO:0003677 NAS:IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0006334 NAS nucleosome assembly
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018246 Hist1h2bc-001 protein_coding Mus_musculus 0 584
ENSMUST00000079251 Hist1h2bg-001 protein_coding Mus_musculus 0 580
ENSMUST00000091756 Hist1h2bl-001 protein_coding Mus_musculus 0 577
ENSMUST00000110467 Hist1h2br-001 protein_coding Mus_musculus 0 575
ENSMUST00000110469 Hist1h2bq-001 protein_coding Mus_musculus 0 575
ENSMUST00000110452 Hist1h2bj-001 protein_coding Mus_musculus 0 575
ENSMUST00000051091 Hist1h2be-001 protein_coding Mus_musculus 0 573
ENSMUST00000091704 Hist1h2be-002 protein_coding Mus_musculus 0 573
ENSMUST00000078156 Hist1h2bh-001 protein_coding Mus_musculus 0 573
ENSMUST00000105106 Hist1h2bf-001 protein_coding Mus_musculus 0 569
ENSMUST00000180288 Hist1h2br-201 protein_coding Mus_musculus 0 568
ENSMUST00000091749 Hist1h2bq-201 protein_coding Mus_musculus 0 568
ENSMUST00000110476 Hist1h2bm-001 protein_coding Mus_musculus 0 566
ENSMUST00000091709 Hist1h2bn-001 protein_coding Mus_musculus 0 555
ENSMUST00000102982 Hist1h2bp-001 protein_coding Mus_musculus 0 547
ENSMUST00000110455 Hist1h2bk-001 protein_coding Mus_musculus 0 542
ENSMUST00000110473 Hist1h2bp-002 protein_coding Mus_musculus 0 538
ENSMUST00000099703 Hist1h2bb-001 protein_coding Mus_musculus 0 508
ENSMUST00000117835 Gm12957-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000070124 Hist1h2ai-001 protein_coding Mus_musculus 0 484
ENSMUST00000078756 Hist2h2aa2-001 protein_coding Mus_musculus 0 481
ENSMUST00000074976 Hist2h2aa1-001 protein_coding Mus_musculus 0 481
ENSMUST00000078267 Hist3h2ba-001 protein_coding Mus_musculus 0 479
ENSMUST00000091742 Hist1h2ah-001 protein_coding Mus_musculus 0 477
ENSMUST00000081342 Hist1h2ap-001 protein_coding Mus_musculus 0 477
ENSMUST00000091745 Hist1h2ao-001 protein_coding Mus_musculus 0 477
ENSMUST00000091751 Hist1h2an-001 protein_coding Mus_musculus 0 475
ENSMUST00000090776 Hist1h2ad-001 protein_coding Mus_musculus 0 475
ENSMUST00000091741 Hist1h2ag-001 protein_coding Mus_musculus 0 475
ENSMUST00000171127 Hist1h2ac-001 protein_coding Mus_musculus 0 475
ENSMUST00000117558 Hist3h2bb-ps-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000102969 Hist1h2ae-001 protein_coding Mus_musculus 0 472
ENSMUST00000073261 Hist1h2af-001 protein_coding Mus_musculus 0 464
ENSMUST00000078369 Hist1h2ab-001 protein_coding Mus_musculus 0 460
ENSMUST00000091708 Hist1h2al-201 protein_coding Mus_musculus 0 457
ENSMUST00000074752 Hist1h2ak-001 protein_coding Mus_musculus 0 451
ENSMUST00000090782 Hist2h2ac-001 protein_coding Mus_musculus 0 448
ENSMUST00000052776 Hist1h2ba-001 protein_coding Mus_musculus 0 438
ENSMUST00000177113 Hist2h2bb-001 protein_coding Mus_musculus 0 433
ENSMUST00000090781 Hist2h2be-001 protein_coding Mus_musculus 0 424
ENSMUST00000108817 Hist3h2a-001 protein_coding Mus_musculus 0 407
ENSMUST00000047697 Trim17-002 protein_coding Mus_musculus 0 407
ENSMUST00000091710 Hist1h2aj-001 unprocessed_pseudogene Mus_musculus 0 403
ENSMUST00000074556 H2afj-001 protein_coding Mus_musculus 0 399
ENSMUST00000052686 H2afx-001 protein_coding Mus_musculus 0 392
ENSDART00000152735 zgc:171759-001 protein_coding Danio_rerio 0 355
ENSDART00000152766 zgc:112234-001 protein_coding Danio_rerio 0 344
ENSDART00000103027 zgc:112234-201 protein_coding Danio_rerio 0 342
ENSMUST00000073115 Hist2h2ab-001 protein_coding Mus_musculus 0 333
ENSDART00000136970 zgc:171759-210 protein_coding Danio_rerio 0 329
ENSDART00000143021 wu:fe11b02-208 protein_coding Danio_rerio 0 316
ENSMUST00000072391 Hist1h2aa-001 protein_coding Mus_musculus 0 311
ENSDART00000121649 wu:fe11b02-203 protein_coding Danio_rerio 0 307
ENSMUST00000118168 Gm11336-001 unprocessed_pseudogene Mus_musculus 0 289
ENSMUST00000051089 Hist2h2bb-201 protein_coding Mus_musculus 0 226

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