C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000613671 HOXA10-201 ENSG00000253293 9606 - 7:27170592-27174255 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000613671
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000613671 7.341±0.00 4.857±0.00 0.007±0.00 10.391±0.00 12.047±0.00 0.015±0.00 4.003±0.00 2.439±0.00 6.037±3.64 1.969±1.47 1.915±0.08 1.362±1.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PA CIL_0003PA_0001 CGP 7:27153716-27175180
CIL_0006I0 CIL_0006I0_0002 CGP 7:27162435-27180013
CIL_0003P7 CIL_0003P7_0001 CGP 7:27170591-27185223

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125581 Hoxa10-001 protein_coding Mus_musculus 0 1871
ENSMUST00000126402 Hoxa10-002 processed_transcript Mus_musculus 0 1637
ENSMUST00000121043 Hoxa10-004 protein_coding Mus_musculus 0 926
ENSMUST00000142611 Hoxa10-003 processed_transcript Mus_musculus 0 771
ENSMUST00000174042 Hoxb9-002 protein_coding Mus_musculus 2e-27 128
ENSMUST00000000010 Hoxb9-001 protein_coding Mus_musculus 2e-27 128
ENSDART00000104612 hmx3-001 protein_coding Danio_rerio 0.0000008 60

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