C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000615771 RBM39-047 ENSG00000131051 9606 - 20:35710328-35721839 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000615771
Transcript ID Ovary Placenta Testis
ENST00000615771 148.454±0.00 61.101±0.00 65.489±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WY CIL_0000WY_0001 CGP 20:35699272-35742312
CIL_0000X2 CIL_0000X2_0001 CGP 20:35703609-35950381

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153514 Rbm39-025 nonsense_mediated_decay Mus_musculus 0 647
ENSMUST00000155837 Rbm39-002 nonsense_mediated_decay Mus_musculus 0 647
ENSMUST00000029149 Rbm39-018 protein_coding Mus_musculus 0 647
ENSMUST00000142071 Rbm39-026 nonsense_mediated_decay Mus_musculus 0 647
ENSMUST00000146297 Rbm39-003 protein_coding Mus_musculus 0 647
ENSMUST00000109587 Rbm39-001 protein_coding Mus_musculus 0 647
ENSMUST00000119414 Gm15575-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000148794 Rbm39-019 protein_coding Mus_musculus 0 407
ENSMUST00000182280 Gm8816-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000126992 Rbm39-020 protein_coding Mus_musculus 1e-34 150
ENSMUST00000135274 Rbm39-017 retained_intron Mus_musculus 2e-33 147

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