C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAN binding protein 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616486 RANBP17-201 ENSG00000204764 9606 + 5:171170130-171298858 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyOvaryPlacentaENST00000616486
Transcript ID Adipose Brain Heart Kidney Ovary Placenta
ENST00000616486 0.147±0.00 1.156±0.00 1.078±0.00 0.413±0.00 0.842±0.42 0.286±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SG CIL_0008SG_0001 VISTA 5:170690333-171291455
CIL_00098H CIL_00098H_0001 VISTA 5:170731788-171333093
CIL_000977 CIL_000977_0001 VISTA 5:170744249-171345366
CIL_00088M CIL_00088M_0001 VISTA 5:170856489-171457417

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102815 Ranbp17-001 protein_coding Mus_musculus 0 2056
ENSMUST00000129179 Ranbp17-002 nonsense_mediated_decay Mus_musculus 0 675
ENSMUST00000154808 Ranbp17-004 processed_transcript Mus_musculus 0 505

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